| Name | Version | Summary | date |
| sequifier |
0.6.1.9 |
Train a transformer model with the command line |
2025-07-14 10:18:57 |
| gene-fetch |
1.0.13 |
Gene Fetch: High-throughput NCBI Sequence Retrieval Tool |
2025-07-08 09:50:55 |
| refget |
0.8.0 |
Python client for refget |
2025-03-11 21:31:04 |
| pyfamsa |
0.5.3.post1 |
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments. |
2025-03-04 00:33:04 |
| mmseqspy |
0.2.0 |
Python utilities for protein sequence clustering and dataset splitting with MMseqs2 |
2025-02-26 17:42:10 |
| batchtensor |
0.0.5 |
Functions to manipulate batches of PyTorch tensors |
2025-02-02 10:57:58 |
| cladetime |
0.3.0 |
Assign clades to SARS-CoV-2 genome sequences at a point in time. |
2025-01-29 03:21:39 |
| rnajena-sugar |
0.5.0 |
A Python framework for bioinformatics |
2025-01-23 15:43:53 |
| ISCT |
0.1.2 |
Interpretable Sequence Clustering Tree |
2025-01-12 15:05:14 |
| pyhmmer |
0.11.0 |
Cython bindings and Python interface to HMMER3. |
2025-01-10 04:20:49 |
| pyncbitk |
0.1.0a1 |
Cython bindings and Python interface to the NCBI C++ Toolkit. |
2024-12-12 16:55:18 |
| escapyde |
1.0.2 |
Yet another ANSI escape sequence library for Python - now modernised! |
2024-12-03 11:52:33 |
| fastapy |
1.0.5 |
A lightweight Python module to read and write FASTA sequence records |
2024-11-17 10:56:56 |
| lazystuff |
1.2.0 |
Lazy-ish list-like objects for streaming APIs. |
2024-11-07 14:24:36 |
| pyswrd |
0.3.0 |
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search. |
2024-11-04 19:37:16 |
| pyopal |
0.7.0 |
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner. |
2024-11-04 13:45:14 |
| batcharray |
0.1.0 |
Functions to manipulate NumPy arrays |
2024-10-24 06:40:33 |
| pytantan |
0.1.3 |
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences. |
2024-10-21 14:59:26 |
| scoring-matrices |
0.3.0 |
Dependency free, Cython-compatible scoring matrices to use with biological sequences. |
2024-10-20 15:11:58 |
| django-sequencefield |
1.0.13 |
Additional field from django taking it's value from a postgresql sequence. It is similar to django AutoField, except that multiple model can share ids from a single sequence. Also add the possibility to generate an id from a sequence AND from the data of another field in the model |
2024-10-04 09:55:55 |